LinearFold Web Server (beta)


Interactive demo
Add a sequence Paste or type your sequence here (length < 100,000):

Or upload a file in FASTA format:
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Set beam size Beam size (1-200):

Available model

     


LinearPartition

Interactive demos for LinearPartition (using Vienna RNAfold thermodynamic model, Lorenz et al 2011, with parameters from Mathews et al 2004)



Please cite the following paper:

* Liang Huang, **He Zhang, **Dezhong Deng, Kai Zhao, Kaibo Liu, David Hendrix, and David H. Mathews (2019). LinearFold: Linear-Time Approximate RNA Folding by 5’-to-3’ Dynamic Programming and Beam Search. Bioinformatics, Volume 35, Issue 14, July 2019, Pages i295–i304. ISMB 2019
*Corresponding Author, **Equal Contribution.

Code: github


Some Other RNA Secondary Structure Prediction Web Servers
RNAfold (Vienna)   RNAstructure (Rochester)   CONTRAfold (Stanford)   Mfold (Albany)   CentroidFold (JBIC)